I run into this issue every once in awhile now, before UDC while i was tuning with the SSR it was something that would happen if I was in 2nd gear and went WOT to fishtail or just get through something quick.
When I first started with UDC this issue went away however most my UDC tunes were fairly mild.
Now when I'm running a high HP tune even though everything is running better including better cruising egt's I will get this if I go WOT. If I ease into it no popping or anything strange just good solid power and managable egt's.
At first I thought it was related to load or rpms but for my situation it is not, it will do it at totally different ends of the rpm range and load makes no difference.
For me I'm left to believe it is my PRV or my fuel pump. My reasons for thinking it's one of these 2 things is because when it pops is when rail pressure is high (My highest RP value in UDC is 23,207) and my fuel pressure gauge will acctually drop right down to 5psi maybe even lower if I stayed on it.
I have a BD Max Flow for a lift pump which is being replaced with a Fass 150 and to be installed soon hopefully, I also plan on ordering T&C's 30,000 PRV. I'd like to even used a PRV block off to test but can't seem to find one. If neither of those fix it then I know for sure it's tuning, in the mean time I'll still be trying to tune this out.
Thats my long winded version of where my trucks at with the popping/missing situation.