There is no old files for an MXS. All the Acert files are crap. The only engines that have pre-EPA files available are the 40 and 70 pin ECM's which ended in early '04. All Acerts except the BXS are 120pin and the 70pin BXS's won't accept the older 70pin non acert files.
Only way to fix an Acert is aftermarket either with BullyDog, PDI, DieselSpec, Boost Engineering ect. Believe me they run AMAZING tuned. The factory chargers are good for around 900hp and the bottom ends are bulletproof. 4 bolt rods and big bearings make a great platform for HP.