If it were mine I would do a straight pipe from the turbo back, EGR delete, if you do that you will probably need to buy a tuner, use all motorcraft filters, use good oil (I swear by Valvoline Premium Blue), and run BG Purge crankcase cleaner at least once every 6 months (Really expencive but worth the money imo)
I went to a seminar about the Power Strokes and they said to change both fuel filters every time they both come in the box from ford so all it is, is a little extra time. They also compared Motorcraft filters to aftermarket oe replacements and the oe replace ment were nothing near the quality of the Motorcraft.
We have a fleet of 6.0 trucks at work and just switching to motorcraft filters and replacing both fuel filters has knocked our repairs in half. Then we started to BG Purge the trucks and have not had an injector failure.
Sorry about the long post.
Congratulations on the new truck!