So I got it all back and hooked up last night. w/a system routing is now:
port out of the block next to the alternator --> heat exchanger --> cooler --> drain into the cast part next to a/c compressor.
Hopefully that's the right routing to get the water through the heat exchanger first.
So far, it's definitely not working like I'd hoped. The w/a lines get hot almost immediately after starting the truck with a cold engine. The water going into the heat exchanger is engine temp, and the water coming out feels just as hot, so it's probably not doing much cooling inside the cooler. BUT, it moves some water, and I haven't even swapped in that RV pump yet. It feels like about 5,000,000 gpm just holding onto the hose lol.
I'm sure it's working a little though, as the engine water temp rises about 5*, to 185, after a good pull. It cools back down IMMEDIATELY though. Have to see how she runs with the trailer on and constant boost/heat. Plus, EGT's seemed down about 50* across the board, even in this early summer heat.