That is exactly right, there will be tables that control the pilot quantities.
As for the RPM limits, there is a couple of things here. As far as raw processing power to keep up with high RPM the ECM should have no issues here. FYI, the same CPU used in the 5.9L ECM is also used on a GM gas motor ECM, they can run up to about 8000 RPM, fuel & spark and running far more complex diagnostics than the Cummins ECM needs to.
Most (if not all) the tables in the Cummins have a rescalable table axis, so you can enter in whatever RPM values you would like, however, there might be limitations in the injector driver hardware that will limit the RPM rather than tables.
Keep in mind that although EFILive is based out of New Zealand and Australia, we have a lot of US based resellers who are also tuners themselves. Our software has been developed in a way to make tuner location irrelevant - logs and tune files can be emailed for review and adjustment.
Cheers,
Cindy