Truck's looking sharp!
Just some notes.... along the way I seen the springs you had on the secondary internal gate and can remembering that they looked on the weak side, now I don't know where they ended up set at? Maybe its locked down and your only on the external?
That external gate can leak internally and this sure phucked me one time trying to set up a buddies truck.
Full boost would leak past the top and get to the regulated side, and the regulator was the type that could not bleed down.
What would happen is the pressure would equalize and the gate would just open working on spring only. (Turned out the piston seal was cooked)
If you haven't already, it might pay to use regulated compressed air as the source and check gate operation and watch for leakage out the bottom port line.
I'd full boost top port (leave bottom port open to atmosphere), lock the internal gate down and make some low rpm pulls, no more than 2600 and see how it responds and start working the gates in. (Foot limit boost or drive to what you want)
I find its usually a really fine line to get the gate to balance, and a pressure guage in the cab to monitor regulated boost is handy.